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RE: [EP-tech] Migrating to Redhat Linux 8.6
- To: "eprints-tech@ecs.soton.ac.uk" <eprints-tech@ecs.soton.ac.uk>
- Subject: RE: [EP-tech] Migrating to Redhat Linux 8.6
- From: Maher Abdellatif Ahmad Qahwash <qahwash@kfupm.edu.sa>
- Date: Fri, 22 Sep 2023 09:10:03 +0000
Sent: 22 September 2023 03:47
To: eprints-tech@ecs.soton.ac.uk <eprints-tech@ecs.soton.ac.uk>
Subject: RE: [EP-tech] Migrating to Redhat Linux 8.6
Internal
Tried this command
./cpanm -l local https://github.com/shlomif/perl-XML-LibXSLT.git@master
But received the same error:
cpanm (App::cpanminus) 1.7047 on perl 5.026003 built for x86_64-linux-thread-multi
Work directory is /root/.cpanm/work/1695350723.167984
You have make /bin/make
You have LWP 6.34
You have /bin/tar: tar (GNU tar) 1.30
Copyright (C) 2017 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <https://gnu.org/licenses/gpl.html>.
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
Written by John Gilmore and Jay Fenlason.
You have /bin/unzip
Cloning https://github.com/shlomif/perl-XML-LibXSLT.git
Cloning into '/tmp/JDue8C3Kpl'...
Already on 'master'
Your branch is up to date with 'origin/master'.
-> OK
--> Working on https://github.com/shlomif/perl-XML-LibXSLT.git@master
Entering /tmp/JDue8C3Kpl
Configuring /tmp/JDue8C3Kpl
Running Makefile.PL
running pkg-config libxslt... ok
looking for -lxslt... no
libxslt not found
Try setting LIBS and INC values on the command line
Or get libxslt and libxml2 from
If you install via RPMs, make sure you also install the -devel
RPMs, as this is where the headers (.h files) are.
-> N/A
-> FAIL Configure failed for https://github.com/shlomif/perl-XML-LibXSLT.git@master. See /root/.cpanm/work/1695350723.167984/build.log for details.
From: eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of Maher Abdellatif Ahmad Qahwash
Sent: Friday, September 22, 2023 5:36 AM
To: eprints-tech@ecs.soton.ac.uk
Subject: RE: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Internal We received the following error: [root@ sftp-gsadmissions-1 bin]# ./cpanm git: //github. com/shlomif/perl-XML-LibXSLT. git@ master
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Internal
We received the following error:
[root@sftp-gsadmissions-1 bin]# ./cpanm git://github.com/shlomif/perl-XML-LibXSLT.git@master
Cloning git://github.com/shlomif/perl-XML-LibXSLT.git ... FAIL
! Failed cloning git repository git://github.com/shlomif/perl-XML-LibXSLT.git
! Couldn't find module or a distribution git://github.com/shlomif/perl-XML-LibXSLT.git@master
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of John Salter
Sent: Friday, September 22, 2023 1:09 AM
To: eprints-tech@ecs.soton.ac.uk
Subject: Re: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. I meant you should try to download/install from GitHub, rather than via dnf or the CPAN archive. Newer
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I meant you should try to download/install from GitHub, rather than via dnf or the CPAN archive.
Newer versions of cpanm apparently allow you to do this (I've never tried this before!):
> cpanm git://github.com/shlomif/perl-XML-LibXSLT.git@master
Does that help at all?
I personally haven't tried running EPrints on RHEL8. Others might be able to answer that question.
Cheers,
John
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk> on behalf of Maher Abdellatif Ahmad Qahwash <qahwash@kfupm.edu.sa>
Sent: 21 September 2023 19:59
To: eprints-tech@ecs.soton.ac.uk <eprints-tech@ecs.soton.ac.uk>
Subject: RE: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton.
CAUTION: This e-mail originated outside the University of Southampton.
Do you mean to download the xml-libxslt 1.96.6 and try to manually install it by running the makefile.pl ....?
Would appreciate if you have clear steps to try to resolve this issue.
Do you know if eprints has been successfully tested to run on redhat 8.6 or not?
-------- Original message --------
From: John Salter <J.Salter@leeds.ac.uk>
Date: 9/21/23 9:28 PM (GMT+03:00)
Subject: Re: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. There are quite a few changes from 1. 96. 6 (which I think is what RHEL provides from their repo) and
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There are quite a few changes from 1.96.6 (which I think is what RHEL provides from their repo) and 2.001001 (CPAN version).
Maybe try cloning the git repo for it, and following their instructions (I can't remember what the process is off the top of my head!).
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk> on behalf of Maher Abdellatif Ahmad Qahwash <qahwash@kfupm.edu.sa>
Sent: 21 September 2023 19:15
To: eprints-tech@ecs.soton.ac.uk <eprints-tech@ecs.soton.ac.uk>
Subject: RE: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton.
CAUTION: This e-mail originated outside the University of Southampton.
Internal
We modified the Makefile.pl file as mentioned in the link, but running the perl Makefile.PL did not work as shown below:
[root@sftp-gsadmissions-1 XML-LibXSLT-2.002001]# perl Makefile.PL
running pkg-config libxslt... ok
looking for -lxslt... no
libxslt not found
Try setting LIBS and INC values on the command line
Or get libxslt and libxml2 from
If you install via RPMs, make sure you also install the -devel
RPMs, as this is where the headers (.h files) are.
[root@sftp-gsadmissions-1 XML-LibXSLT-2.002001]# ^C
[root@sftp-gsadmissions-1 XML-LibXSLT-2.002001]# make
make: *** No targets specified and no makefile found. Stop.
Are there any other modification required to be made in the Makefile.PL file? As it is still complaining that libxslt not found??
Thanks,
Maher
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of Maher Abdellatif Ahmad Qahwash
Sent: Thursday, September 21, 2023 8:11 PM
To: eprints-tech@ecs.soton.ac.uk
Subject: RE: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Internal Where do I get the Makefile. pl file to modify it? After modifying it should I still use CPANM
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Internal
Where do I get the Makefile.pl file to modify it?
After modifying it should I still use CPANM to install?
Please send the steps f possible.
Thanks,
Maher
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of John Salter
Sent: Thursday, September 21, 2023 6:44 PM
To: eprints-tech@ecs.soton.ac.uk
Subject: RE: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Whatever the problem is, it’s not obvious! This might be related: https: //github. com/shlomif/perl-XML-LibXSLT/issues/6
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Whatever the problem is, it’s not obvious!
This might be related:
https://github.com/shlomif/perl-XML-LibXSLT/issues/6
Does this update to the Makefile.pl help:
https://github.com/shlomif/perl-XML-LibXSLT/commit/45edf81581d6ef4e9a269feda31c5f57633ac0d9
It doesn’t look like the above commit has made it to a release version yet – but I’m not sure why that would cause the CPAN route to fail, unless the CPAN and DNF are different version numbers…
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of Maher Abdellatif Ahmad Qahwash
Sent: Thursday, September 21, 2023 3:42 PM
To: eprints-tech@ecs.soton.ac.uk
Subject: RE: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton.
CAUTION: This e-mail originated outside the University of Southampton.
Internal
We are not sure if installing the perl-XML-LibXSLT using dnf will cause any segmentation faults with our Apache httpd webserver or not. We are just following the recommendation in the documentation to install using CPAN.
Following is the cpanm –V output:
# ./cpanm -V
cpanm (App::cpanminus) version 1.7047 (./cpanm)
perl version 5.026003 (/usr/bin/perl)
%Config:
archname=x86_64-linux-thread-multi
installsitelib=/usr/local/share/perl5
installsitebin=/usr/local/bin
installman1dir=/usr/share/man/man1
installman3dir=/usr/share/man/man3
sitearchexp=/usr/local/lib64/perl5
sitelibexp=/usr/local/share/perl5
vendorarch=/usr/lib64/perl5/vendor_perl
vendorlibexp=/usr/share/perl5/vendor_perl
archlibexp=/usr/lib64/perl5
privlibexp=/usr/share/perl5
%ENV:
@INC:
FatPacked::94715887577112=HASH(0x5624c2d56818)
/usr/local/lib64/perl5
/usr/local/share/perl5
/usr/lib64/perl5/vendor_perl
/usr/share/perl5/vendor_perl
/usr/lib64/perl5
/usr/share/perl5
This is the content of the file “XML-LibXSLT-2.002001-0.yml”
---
distribution: !!perl/hash:CPAN::Distribution
CALLED_FOR: XML::LibXSLT
CHECKSUM_STATUS: OK
ID: S/SH/SHLOMIF/XML-LibXSLT-2.002001.tar.gz
RO:
CPAN_COMMENT: ~
CPAN_USERID: SHLOMIF
archived: tar
build_dir: /root/.local/share/.cpan/build/XML-LibXSLT-2.002001-0
incommandcolor: 1
localfile: /root/.local/share/.cpan/sources/authors/id/S/SH/SHLOMIF/XML-LibXSLT-2.002001.tar.gz
mandatory: 1
negative_prefs_cache: 1
prefs: {}
reqtype: c
unwrapped: !!perl/hash:CPAN::Distrostatus
COMMANDID: 1
FAILED: ''
TEXT: YES
TIME: 1695294479
writemakefile: !!perl/hash:CPAN::Distrostatus
COMMANDID: 1
FAILED: 1
TEXT: "NO -- No 'Makefile' created\n"
TIME: 1695294480
perl:
$^X: /usr/bin/perl
mtime_$^X: 1673971108
mtime_dll: 0
sitearchexp: /usr/local/lib64/perl5
time: 1695294480
Thank you for your support.
Maher
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of Andrew Mehta
Sent: Thursday, September 21, 2023 5:31 PM
To: eprints-tech@ecs.soton.ac.uk
Subject: Re: [EP-tech] Migrating to Redhat Linux 8.6
Is it a problem for your EPrints migration if perl-XML-LibXSLT is working fine for you? The CPAN install idea is only if you sometimes find the perl-XML-LibXSLT package causes segmentation faults with the Apache httpd webserver. You mention
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Is it a problem for your EPrints migration if
perl-XML-LibXSLT
is working fine for you?
The CPAN install idea is only if you sometimes find the perl-XML-LibXSLT package causes segmentation faults with the Apache httpd webserver.
You mention you are using cpanm.
Is the following command...
cpanm -V
...showing the correct installation locations?
Is any further info in build logs in your user's home directory's ".cpanm" folder?
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk> on behalf of Maher Abdellatif Ahmad Qahwash <qahwash@kfupm.edu.sa>
Sent: 21 September 2023 15:20
To: eprints-tech@ecs.soton.ac.uk <eprints-tech@ecs.soton.ac.uk>
Subject: RE: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton.
CAUTION: This e-mail originated outside the University of Southampton.
Internal
Sorry the libxslt is a folder (not a file) and is located here:
/usr/include/libxslt
We also have the following libxslt files here:
/usr/lib64/libxslt.so.1.1.32
/usr/lib64/libxslt-plugins
/usr/lib64/libxslt.so.1
/usr/lib64/pkgconfig/libxslt.pc
/usr/lib64/libxslt.so
/usr/share/licenses/libxslt
The error appearing when trying to install using CPAN is this:
looking for -lxslt... no
libxslt not found
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of Maher Abdellatif Ahmad Qahwash
Sent: Thursday, September 21, 2023 5:01 PM
To: eprints-tech@ecs.soton.ac.uk
Subject: RE: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Internal We installed from RPM dnf install perl-XML-LibXSLT which was successful and resolved any
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Internal
We installed from RPM dnf install perl-XML-LibXSLT which was successful and resolved any dependencies.
Then we did a dnf remove perl-XML-LibXSLT and then a cpanm (Yes we are using cpanm) XML::LibXSLT but received the same error and the installation failed.
Could the issue be from the location of the libxslt file?
# which libxslt
/usr/bin/which: no libxslt in (/usr/local/sbin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin)
The libxslt file is located here:
/usr/include/libxslt
Thanks
Maher
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of John Salter
Sent: Thursday, September 21, 2023 4:49 PM
To: eprints-tech@ecs.soton.ac.uk
Subject: RE: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Apologies, that previous ‘which’ wasn’t too helpful :\ If you try installing from RPM: >dnf install
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Apologies, that previous ‘which’ wasn’t too helpful :\
If you try installing from RPM:
>dnf install perl-XML-LibXSLT
Does it work (and resolve dependencies)?
If so, you could then remove the RPM version:
>dnf remove perl-XML-LibXSLT --noautoremove
and then try installing the CPAN version again.
Another thing you could try is using ‘cpanm’ – an alternative to CPAN.
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of Maher Abdellatif Ahmad Qahwash
Sent: Thursday, September 21, 2023 2:37 PM
To: eprints-tech@ecs.soton.ac.uk
Subject: RE: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton.
CAUTION: This e-mail originated outside the University of Southampton.
Internal
I’m using the root user for running the below command and for trying to install the CPAN module, this is the output:
# which libxslt
/usr/bin/which: no libxslt in (/usr/local/sbin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin)
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of John Salter
Sent: Thursday, September 21, 2023 4:33 PM
To: eprints-tech@ecs.soton.ac.uk
Subject: RE: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. If you run: > which libxslt As the same user you are trying to install the CPAN module with, does
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If you run:
> which libxslt
As the same user you are trying to install the CPAN module with, does it return anything?
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of Maher Abdellatif Ahmad Qahwash
Sent: Thursday, September 21, 2023 2:20 PM
To: eprints-tech@ecs.soton.ac.uk
Subject: RE: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton.
CAUTION: This e-mail originated outside the University of Southampton.
Internal
Hi Martin
The packages libxslt-devel libxslt libxml2-devel libxml2 are only installed using dnf and are not installed again on the system using CPAN. As for the XML::LibXSLT it is recommended in the documentation to install it using CPAN and not as an rpm using dnf.
Any ideas?
Thanks,
Maher
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of Martin Brändle
Sent: Thursday, September 21, 2023 3:56 PM
To: eprints-tech@ecs.soton.ac.uk
Subject: Re: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Hi, if you have the rpms installed, you don’t need the CPAN package (you should remove it) – otherwise
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Hi,
if you have the rpms installed, you don’t need the CPAN package (you should remove it) – otherwise you may run into conflicts.
Kind regards,
Martin
--
Dr. Martin Brändle
Zentrale Informatik
Universität Zürich
Stampfenbachstr. 73
CH-8006 Zürich
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk> on behalf of Maher Abdellatif Ahmad Qahwash <qahwash@kfupm.edu.sa>
Sent: 21 September 2023 15:20
To: eprints-tech@ecs.soton.ac.uk <eprints-tech@ecs.soton.ac.uk>
Subject: RE: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton.
CAUTION: This e-mail originated outside the University of Southampton.
Internal
Sorry the libxslt is a folder (not a file) and is located here:
/usr/include/libxslt
We also have the following libxslt files here:
/usr/lib64/libxslt.so.1.1.32
/usr/lib64/libxslt-plugins
/usr/lib64/libxslt.so.1
/usr/lib64/pkgconfig/libxslt.pc
/usr/lib64/libxslt.so
/usr/share/licenses/libxslt
The error appearing when trying to install using CPAN is this:
looking for -lxslt... no
libxslt not found
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of Maher Abdellatif Ahmad Qahwash
Sent: Thursday, September 21, 2023 5:01 PM
To: eprints-tech@ecs.soton.ac.uk
Subject: RE: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Internal We installed from RPM dnf install perl-XML-LibXSLT which was successful and resolved any
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Internal
We installed from RPM dnf install perl-XML-LibXSLT which was successful and resolved any dependencies.
Then we did a dnf remove perl-XML-LibXSLT and then a cpanm (Yes we are using cpanm) XML::LibXSLT but received the same error and the installation failed.
Could the issue be from the location of the libxslt file?
# which libxslt
/usr/bin/which: no libxslt in (/usr/local/sbin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin)
The libxslt file is located here:
/usr/include/libxslt
Thanks
Maher
From:
eprints-tech-request@ecs.soton.ac.uk <eprints-tech-request@ecs.soton.ac.uk>
On Behalf Of John Salter
Sent: Thursday, September 21, 2023 4:49 PM
To: eprints-tech@ecs.soton.ac.uk
Subject: RE: [EP-tech] Migrating to Redhat Linux 8.6
CAUTION: This e-mail originated outside the University of Southampton. CAUTION: This e-mail originated outside the University of Southampton. Apologies, that previous ‘which’ wasn’t too helpful :\ If you try installing from RPM: >dnf install
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Apologies, that previous ‘which’ wasn’t too helpful :\
If you try installing from RPM:
>dnf install perl-XML-LibXSLT
Does it work (and resolve dependencies)?
If so, you could then remove the RPM version:
>dnf remove perl-XML-LibXSLT --noautoremove
and then try installing the CPAN version again.
Another thing you could try is using ‘cpanm’ – an alternative to CPAN.
...
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